作为估计高维网络的工具，图形模型通常应用于钙成像数据以估计功能性神经元连接，即神经元活动之间的关系。但是，在许多钙成像数据集中，没有同时记录整个神经元的人群，而是部分重叠的块。如（Vinci等人2019年）最初引入的，这导致了图形缝问题，在该问题中，目的是在仅观察到功能的子集时推断完整图的结构。在本文中，我们研究了一种新颖的两步方法来绘制缝的方法，该方法首先使用低级协方差完成技术在估计图结构之前使用低级协方差完成技术划分完整的协方差矩阵。我们介绍了三种解决此问题的方法：阻止奇异价值分解，核标准惩罚和非凸低级别分解。尽管先前的工作已经研究了低级别矩阵的完成，但我们解决了阻碍遗失的挑战，并且是第一个在图形学习背景下研究问题的挑战。我们讨论了两步过程的理论特性，通过证明新颖的l无限 - 基 - 误差界的矩阵完成，以块错失性证明了一种提出的方​​法的图选择一致性。然后，我们研究了所提出的方法在模拟和现实世界数据示例上的经验性能，通过该方法，我们显示了这些方法从钙成像数据中估算功能连通性的功效。

网络模型提供了一种强大而灵活的框架，用于分析各种结构化数据源。然而，在许多感兴趣的情况下，可以构建多个网络以捕获底层现象的不同方面或随时间捕获改变行为。在这样的设置中，群集在一起识别共同结构模式的相关网络通常是有用的。在本文中，我们提出了一种凸面的网络聚类任务方法。我们的方法使用凸融合惩罚来诱导平稳变化的树状集群结构，消除了选择群集的群数。我们为凸网络聚类提供了一种有效的算法，并证明了其对合成示例的有效性。

Gaussian graphical models provide a powerful framework for uncovering conditional dependence relationships between sets of nodes; they have found applications in a wide variety of fields including sensor and communication networks, physics, finance, and computational biology. Often, one observes data on the nodes and the task is to learn the graph structure, or perform graphical model selection. While this is a well-studied problem with many popular techniques, there are typically three major practical challenges: i) many existing algorithms become computationally intractable in huge-data settings with tens of thousands of nodes; ii) the need for separate data-driven hyperparameter tuning considerably adds to the computational burden; iii) the statistical accuracy of selected edges often deteriorates as the dimension and/or the complexity of the underlying graph structures increase. We tackle these problems by developing the novel Minipatch Graph (MPGraph) estimator. Our approach breaks up the huge graph learning problem into many smaller problems by creating an ensemble of tiny random subsets of both the observations and the nodes, termed minipatches. We then leverage recent advances that use hard thresholding to solve the latent variable graphical model problem to consistently learn the graph on each minipatch. Our approach is computationally fast, embarrassingly parallelizable, memory efficient, and has integrated stability-based hyperparamter tuning. Additionally, we prove that under weaker assumptions than that of the Graphical Lasso, our MPGraph estimator achieves graph selection consistency. We compare our approach to state-of-the-art computational approaches for Gaussian graphical model selection including the BigQUIC algorithm, and empirically demonstrate that our approach is not only more statistically accurate but also extensively faster for huge graph learning problems.

While the brain connectivity network can inform the understanding and diagnosis of developmental dyslexia, its cause-effect relationships have not yet enough been examined. Employing electroencephalography signals and band-limited white noise stimulus at 4.8 Hz (prosodic-syllabic frequency), we measure the phase Granger causalities among channels to identify differences between dyslexic learners and controls, thereby proposing a method to calculate directional connectivity. As causal relationships run in both directions, we explore three scenarios, namely channels' activity as sources, as sinks, and in total. Our proposed method can be used for both classification and exploratory analysis. In all scenarios, we find confirmation of the established right-lateralized Theta sampling network anomaly, in line with the temporal sampling framework's assumption of oscillatory differences in the Theta and Gamma bands. Further, we show that this anomaly primarily occurs in the causal relationships of channels acting as sinks, where it is significantly more pronounced than when only total activity is observed. In the sink scenario, our classifier obtains 0.84 and 0.88 accuracy and 0.87 and 0.93 AUC for the Theta and Gamma bands, respectively.

This is paper for the smooth function approximation by neural networks (NN). Mathematical or physical functions can be replaced by NN models through regression. In this study, we get NNs that generate highly accurate and highly smooth function, which only comprised of a few weight parameters, through discussing a few topics about regression. First, we reinterpret inside of NNs for regression; consequently, we propose a new activation function--integrated sigmoid linear unit (ISLU). Then special charateristics of metadata for regression, which is different from other data like image or sound, is discussed for improving the performance of neural networks. Finally, the one of a simple hierarchical NN that generate models substituting mathematical function is presented, and the new batch concept ``meta-batch" which improves the performance of NN several times more is introduced. The new activation function, meta-batch method, features of numerical data, meta-augmentation with metaparameters, and a structure of NN generating a compact multi-layer perceptron(MLP) are essential in this study.

We present a novel dataset named as HPointLoc, specially designed for exploring capabilities of visual place recognition in indoor environment and loop detection in simultaneous localization and mapping. The loop detection sub-task is especially relevant when a robot with an on-board RGB-D camera can drive past the same place (``Point") at different angles. The dataset is based on the popular Habitat simulator, in which it is possible to generate photorealistic indoor scenes using both own sensor data and open datasets, such as Matterport3D. To study the main stages of solving the place recognition problem on the HPointLoc dataset, we proposed a new modular approach named as PNTR. It first performs an image retrieval with the Patch-NetVLAD method, then extracts keypoints and matches them using R2D2, LoFTR or SuperPoint with SuperGlue, and finally performs a camera pose optimization step with TEASER++. Such a solution to the place recognition problem has not been previously studied in existing publications. The PNTR approach has shown the best quality metrics on the HPointLoc dataset and has a high potential for real use in localization systems for unmanned vehicles. The proposed dataset and framework are publicly available: https://github.com/metra4ok/HPointLoc.

In the Earth's magnetosphere, there are fewer than a dozen dedicated probes beyond low-Earth orbit making in-situ observations at any given time. As a result, we poorly understand its global structure and evolution, the mechanisms of its main activity processes, magnetic storms, and substorms. New Artificial Intelligence (AI) methods, including machine learning, data mining, and data assimilation, as well as new AI-enabled missions will need to be developed to meet this Sparse Data challenge.

Recent work leverages the expressive power of generative adversarial networks (GANs) to generate labeled synthetic datasets. These dataset generation methods often require new annotations of synthetic images, which forces practitioners to seek out annotators, curate a set of synthetic images, and ensure the quality of generated labels. We introduce the HandsOff framework, a technique capable of producing an unlimited number of synthetic images and corresponding labels after being trained on less than 50 pre-existing labeled images. Our framework avoids the practical drawbacks of prior work by unifying the field of GAN inversion with dataset generation. We generate datasets with rich pixel-wise labels in multiple challenging domains such as faces, cars, full-body human poses, and urban driving scenes. Our method achieves state-of-the-art performance in semantic segmentation, keypoint detection, and depth estimation compared to prior dataset generation approaches and transfer learning baselines. We additionally showcase its ability to address broad challenges in model development which stem from fixed, hand-annotated datasets, such as the long-tail problem in semantic segmentation.

Applying deep learning concepts from image detection and graph theory has greatly advanced protein-ligand binding affinity prediction, a challenge with enormous ramifications for both drug discovery and protein engineering. We build upon these advances by designing a novel deep learning architecture consisting of a 3-dimensional convolutional neural network utilizing channel-wise attention and two graph convolutional networks utilizing attention-based aggregation of node features. HAC-Net (Hybrid Attention-Based Convolutional Neural Network) obtains state-of-the-art results on the PDBbind v.2016 core set, the most widely recognized benchmark in the field. We extensively assess the generalizability of our model using multiple train-test splits, each of which maximizes differences between either protein structures, protein sequences, or ligand extended-connectivity fingerprints. Furthermore, we perform 10-fold cross-validation with a similarity cutoff between SMILES strings of ligands in the training and test sets, and also evaluate the performance of HAC-Net on lower-quality data. We envision that this model can be extended to a broad range of supervised learning problems related to structure-based biomolecular property prediction. All of our software is available as open source at https://github.com/gregory-kyro/HAC-Net/.

Machine learning (ML) models are nowadays used in complex applications in various domains, such as medicine, bioinformatics, and other sciences. Due to their black box nature, however, it may sometimes be hard to understand and trust the results they provide. This has increased the demand for reliable visualization tools related to enhancing trust in ML models, which has become a prominent topic of research in the visualization community over the past decades. To provide an overview and present the frontiers of current research on the topic, we present a State-of-the-Art Report (STAR) on enhancing trust in ML models with the use of interactive visualization. We define and describe the background of the topic, introduce a categorization for visualization techniques that aim to accomplish this goal, and discuss insights and opportunities for future research directions. Among our contributions is a categorization of trust against different facets of interactive ML, expanded and improved from previous research. Our results are investigated from different analytical perspectives: (a) providing a statistical overview, (b) summarizing key findings, (c) performing topic analyses, and (d) exploring the data sets used in the individual papers, all with the support of an interactive web-based survey browser. We intend this survey to be beneficial for visualization researchers whose interests involve making ML models more trustworthy, as well as researchers and practitioners from other disciplines in their search for effective visualization techniques suitable for solving their tasks with confidence and conveying meaning to their data.